We have released a new option to the system today, the ability to have "fare schemes" for agencies, which enables you to give specific pricing sets to agencies.
This is in addition to the commission structures which we have already in place.
Read more about it:
We have updated the Mass update and Mass fare upload to have the same scheme basis.
Mass fare update: https://aerocrs.zendesk.com/hc/en-us/articles/205410043-Mass-fare-update
As usual for any issues, please open a ticket in the system.